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Introduction
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Membrane fusion is the common mechanism
employed by cells for the controlled release of a great variety of
substances, including endocrine hormones such as insulin, digestive
enzymes, and a vast array of mediators, such as histamine, adrenaline,
and many cytokines and growth factors (see Vesicles can bud and fuse with membranes).
It permits intercellular communication locally or at a distance. Fusion
can be regulated in time and can be highly localized within cells,
thereby allowing release to occur in precisely timed spatial patterns.
In the nervous system, exquisitely fine temporal control of fusion at
precisely determined synaptic contacts allows quantal amounts of
neurotransmitter to be released in spatial patterns within neural
networks, in turn permitting information to be processed, recombined,
and stored. In each case, membrane-bound vesicles containing the
material to be secreted fuse with the plasma membrane when required
(see The synapse is a model system for exocytosis). As the
lipid bilayers of vesicle and plasma membrane merge into one, the lumen
of the vesicle becomes continuous with the extracellular space,
resulting in the secretion of the stored content by "exocytosis."
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Vesicles also fuse with membranes of
organelles, and intracellular transport is a universal and obligatory
process for all eukaryotes. A variety of different kinds of vesicles
travel through the cytoplasm, executing a complex pattern of secretory,
biosynthetic and endocytic protein traffic to deliver distinct groups
of proteins and lipids to the different organelles they target for
fusion. Biosynthetic transport of many newly synthesized proteins
occurs from their site of synthesis in the endoplasmic reticulum via
the Golgi stack to the various intracellular compartments where they
function. Vesicle transport originating at the plasma membrane, a
process called endocytosis, is responsible for internalizing and
distributing macromolecules and key nutrients such as vitamins, iron,
and cholesterol. Endocytosis also allows the sensitivity of cells to
external signals to be dynamically regulated by providing means to
control the turnover of signaling receptors (see Receptors recycle via endocytosis).
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By the early 1960s, George Palade had
captured and brilliantly interpreted images of "zymogen granules" —
vesicles storing digestive enzymes in the pancreas — with their
membranes merging with the cell surface in the process of discharging
their content. In the decade that followed, Palade discovered the
secretory pathway and it became clear that membrane fusion must be
highly specific to ensure accurate delivery within the cell (1945).
However, the fundamental mechanism of membrane fusion and its exquisite
specificity remained a central mystery of cell biology.
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Background
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Figure 1
Cargo transport between intracellular compartments and
membrane fusion requires general cytosolic proteins, such as the
N-ethyl-maleimide (NEM)-sensitive fusion protein (NSF). After
NEM-inactivation of NSF, vesicles still bud (using cytoplasmic coat
proteins, shown in purple) and uncoat, but they fail to fuse and hence
can be seen to accumulate using electron microscopy. NSF was purified
according to its capacity to restore transport between Golgi cisternae
after inhibition by NEM.
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The identification of proteins needed for
membrane fusion stemmed from the cell-free reconstitution of protein
transport, involving vesicle budding and fusion in the Golgi (1887)
(and see The cell-free reconstitution of vesicle transport).
The sugar chains of a glycoprotein (in this case, VSV G protein) mature
as it is transported between cisternae of isolated Golgi stacks. The
extent of this glycosylation is a measure of the amount of transport.
In the cell free assay, Golgi membrane transport requires a cytosol
fraction and ATP. As diagrammed in Figure 1,
transport is prevented when the reaction is treated with the sulfhydryl
alkylating reagent N-ethylmaleimide (NEM), which selectively reacts
with amino acid side chains containing terminal -SH groups. The N-ethylmaleimide S
ensitive Factor (NSF) was purified from cytosol fractions based on its ability to restore transport
following NEM inactivation (1883). Electron microscopy and other tests revealed that NSF is required
for fusion since vesicles accumulate after NEM inhibition (1890).
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We soon appreciated that NSF is an ATPase
required for vesicle fusion at many compartments in the cell, and that
it is extremely well conserved in evolution. Sec18p (NSF) from yeast
can replace NSF in fusion with the Golgi of higher animals (1949),
foreshadowing the universality of the fusion mechanism.
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Figure 2
Membrane fusion requires soluble NSF attachment proteins
(SNAPs). SNAPs function as adaptor proteins, mediating the binding of
NSF to compartment-specific SNAP receptors (SNAREs), and were purified
on the basis of their ability to bind to SNAP receptors on membranes
and thereby also bind NSF to membranes.
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Because NSF is a soluble cytoplasmic
protein, it must bind to membranes to function in the fusion process.
How this happens was clarified with the identification of Soluble NSF Attachment
Protein (SNAP), which was purified according to its ability to bind NSF to Golgi membranes,
as diagrammed in Figure 2(782).
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Figure 3
Cycle of 20S particle assembly and disassembly. NSF,
SNAPs and SNAREs form hetero-oligomeric complexes, so-called 20S
particles. ATP hydrolysis by NSF dissociates the 20S particles,
regenerating the individual components for another round of membrane
fusion.
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How, then, does SNAP — which is also a cytosolic protein —
bind to membranes? SNAP binds to one or more saturable, high affinity
"SNAP REceptors"
("which we termed SNAREs") on Golgi membranes before binding to the
ATP-bound form of NSF. This complex of NSF, SNAP and SNARE (see Figure 3)
sediments as a 20S particle after extraction from membranes with mild
detergents. When NSF hydrolyzes the ATP, it releases itself from the
complex (783).
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It seemed likely that SNAREs would be
directly inserted into membranes because the SNAP receptors retain
their ability to bind SNAP, even after extraction of membranes with
strong alkali, a harsh treatment that removes all but integral membrane
proteins (1948). That put purification of this membrane
protein(s) at the very top of our agenda because of the expectation
that lipid bilayer fusion would require membrane-anchored proteins. The
SNARE proteins thus became the prime candidates for the fusion proteins.
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The experiment
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The meaning of the seemingly futile cycle
of membrane binding and ATPase-driven release of NSF was unclear at the
time Söllner joined the Rothman lab as a postdoctoral fellow in 1991.
At the time, we imagined that energy from hydrolysis of ATP somehow
activated the membrane-anchored SNAREs to power fusion. However, the
existence of the cycle had a huge impact on our strategy for
identifying the SNAREs. The assembly and disassembly of 20S particles,
involving binding and release of NSF from SNAP, respectively, could be
exploited as sequential affinity purification steps to isolate SNAREs.
Previous experiments had shown that standard chromatographic methods
and a single affinity step were inadequate for isolating SNAREs; the
20S ATPase cycle would add a second level of biological specificity.
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SNARE activity could be found in crude
membrane fractions from homogenates of various cell lines and animal
tissues, in addition to the purified Golgi membranes in which it was
originally detected. It turned out that brain homogenates have the
highest specific SNARE activity of thetissues that were tested, and
large quantities of SNAREs could be easily obtained. These are, of
course, the classic criteria for choosing a source for protein
purification, but in our case the choice of brain would soon prove to
have been mostfortunate for unexpected reasons. Gray matter was
homogenized, the total membrane fraction was isolated by
centrifugation, and then a "soluble" protein extract was prepared by
treating the membrane pellet with a detergent. This detergent extract
contained SNARE activity as well as the bulk of integral membrane
proteins now "solubilized"; i.e., distributed among micelles of the
detergent.
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Figure 4
Recombinant SNAP, and epitope-tagged NSF were assembled
into 20S particles together with SNAREs derived from
detergent-solubilized membrane fractions in the presence of the
non-hydrolyzable ATP analogue, ATPγS. The 20S particles were then
immobilized on beads via an antibody directed to the epitope-tagged
NSF, washed in the presence of MgATPγS ("non-specific eluate") and then
disassembled in the presence of MgATP, releasing SNAPs and SNAREs
("specific eluate"). NSF remains bound via the antibody to the beads.
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The assembly arm of the NSF cycle was
then utilized on a preparative scale as the first of two biologically
specific steps, depicted in Figure 4.
The idea was that SNAREs would be sequestered from the bulk of membrane
protein by incorporation into 20S complexes formed with exogenously
added, purified recombinant (bacterially expressed) NSF and SNAP
proteins. This incubation would be done in the presence of ATPγS (a
nonhydrolyzable analogue of ATP) and in the absence of free magnesium
ion (Mg2+ is required for hydrolysis of ATP by NSF) to
promote 20S particle assembly. The recombinant NSF was expressed with a
short peptide epitope from myc to allow the 20S particles to be
isolated with a monoclonal antibody (immobilized on beads) directed
against this myc tag (Figure 4).
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The second biologically specific step recapitulated the disassembly
of 20S particles. As depicted in Figure 4,
SNAREs would be released when the beads are incubated with magnesium
ion and ATP to allow NSF to hydrolyze ATP. Recombinant myc-tagged NSF
would remain bound to the beads by the antibody, but the recombinant
SNAP proteins would be released along with the SNAP binding proteins
from the brain membranes.
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Figure 5
The specific MgATP-eluate was analyzed by polyacrylamide
gel electrophoresis. Proteins were revealed by staining with Coomassie
blue and then identified by amino acid sequencing and mass
spectroscopy. The bands at the top of the gel were also observed in the
nonspecific eluate. (Adapted from 785.)
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Because vesicle fusion occurs at many
membrane compartments, we had suspected that cells would have a large
family of SNARE proteins, related in sequence and differing in
location. We were therefore surprised when the SNAREs derived from
whole brain yielded a remarkably simple protein pattern (shown in Figure 5)
consisting of only four proteins, each present in the specific (MgATP)
eluate and absent from the nonspecific (MgATPγS) eluate.
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Figure 6
When an action potential moving along a nerve axon
reaches a nerve terminal, it causes calcium to enter, which in turn
triggers the fusion of synaptic vesicles and the release of
neurotransmitter into the synaptic cleft. The neurotransmitters bind
to specific receptors on the post-synaptic cell, resulting in an
altered membrane potential or triggering of a signal transduction
pathway, or both. Synaptic vesicle fusion requires the v-SNARE
synaptobrevin /VAMP on synaptic vesicles and the t-SNAREs syntaxin and
SNAP-25 on the presynaptic plasma membrane.
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The identity and purity of these
membrane proteins was established by microsequencing and by mass
spectroscopy of peptides derived from the very small amount of material
we had isolated. All four SNAREs turned out to be proteins found in
synapses (Figure 6). Although they had all previously been cloned and sequenced, their
function was still unknown. Two are isoforms of syntaxin, a plasma
membrane protein identified by Richard Scheller (1937) based on its ability to
bind synaptotagmin, a synaptic vesicle calcium sensor (1941).
The third SNARE protein is SNAP-25, short for synaptosome-associated protein of 25 kDa,
cloned by Michael Wilson (1944).
SNAP-25 mainly resides in the plasma membrane and was originally
identified because of its abundance in synapses. Its connection to
syntaxin and to membrane fusion was a surprise, as was the coincidental
relationship of its acronym to that of the soluble NSF attachment
protein, SNAP.
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VAMP/Synaptobrevin-2 was the last SNARE
protein to emerge. It had been cloned by DeCamilli and Jahn, and
independently by Scheller (1950; 1940). In contrast
to SNAP-25 and syntaxin, VAMP resides mainly in synaptic vesicles. The
discovery of VAMP in the complex was the lynchpin observation because
it immediately suggested how the complex of SNARE proteins (perhaps
with NSF and SNAP) could be important for membrane fusions. Since VAMP
protrudes from the vesicle membrane into the cytosol, and syntaxin and
SNAP-25 likewise protrude from the plasma membrane, a complex involving
all three integral membrane proteins could bring the vesicle to the
plasma membrane, placing their lipid bilayers within molecular contact
range (Figure 6).
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The SNARE hypothesis
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We then went on to interpret the SNARE
complex from a very broad perspective instead of limiting ourselves to
the special point-of-view of synaptic vesicle exocytosis. First
principles require that vesicles and targets somehow be marked to
indicate which vesicles will fuse where. This, in turn, indicates that
vesicle and target markers must be matched pairwise. We suggested that
the simplest mechanism for matching is self-assembly, in which only
matching pairs of "cognate" vesicle ("v") and target ("t") markers bind
each other between membranes, thereby forming a "v-t" complex
prerequisite for membrane fusion.
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Based on our cognate vesicle and target marker concept, we proposed the
"SNARE hypothesis" in which the SNAREs are the vesicle and target markers,
which we termed v-SNAREs and t-SNAREs (see SNARES are responsible for membrane fusion).
VAMP is the v-SNARE of the synaptic vesicle; syntaxin and SNAP-25 are
the subunits of the cognate t-SNARE in the plasma membrane. The SNARE
hypothesis provides the framework to generalize our results. We
suggested that each type of vesicle in the cell would have its own
characteristic v-SNARE, a homologue of VAMP, and that each target
membrane in the cell would be marked by a characteristic t-SNARE,
having subunits homologous to syntaxin and SNAP-25. In addition, we
suggested that "In the simplest view, that is, if there were no other
source of specificity, only when complementary v-SNARE and t-SNARE
pairs engage would a productive fusion event be initiated" (785).
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Consistent with our simple model, VAMP
and syntaxin are membrane-anchored proteins with cytoplasmic domains,
and SNAP-25 is anchored to the cytoplasmic side of the plasma membrane
via covalently attached fatty acids. Close to equimolar amounts of
VAMP, syntaxin (its two isoforms considered together) and SNAP-25 were
recovered in the isolated complexes. Furthermore, the SNARE proteins
were isolated because they bind to and form a 20S particle with NSF and
SNAPs, which are known to function in fusion, implying that SNAREs also
function in fusion. The SNARE complex progressed from first discovery
to final publication in a dizzying sweep lasting only 5 weeks.
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The legacy
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At the time of our experiment, membrane
fusion was complex and confusing because a conceptual framework with
which to organize the continuously increasing list of genes and
sequences was lacking. A great many genes and proteins of yeast and
animal cells, including neurons, were implicated as being somehow
involved in the overall process of vesicle transport or fusion or its
regulation. It was readily appreciated that many of these genes and
proteins belong to evolutionarily conserved families affecting
different transport steps (reviewed in 1938). A dozen or more
proteins were known to reside in the synaptic vesicle alone. But it was
guess work as to which proteins could catalyze fusion or provide for
its specificity, as distinct from affecting fusion indirectly at the
level of cellular regulation, and many proteins had been considered to
be candidates for fusion, including at one time or another
synaptophysin, synaptoporin and SV2. Interestingly, although VAMP and
syntaxin were seen to be important players, they were not highlighted
in this context and not suggested to form a complex, and SNAP-25 was
not connected to exocytosis.
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The primary impact of our paper stemmed
from its combination of an unexpected discovery — the SNARE complex —
and a broad and clearly stated concept — the SNARE hypothesis — deduced
from it. Its impact was amplified because the discovery of the SNARE
complex firmly linked three fields (cell biology (vesicle transport),
physiology (endocrine and exocrine secretion), and neurobiology
(synaptic transmission)), three disciplines (cell-free biochemistry,
yeast genetics, and electrophysiology), and many favorite cells and
organisms. As a result our paper changed the focus of cell biology,
away from differences in physiology and regulation and on to core
machinery and universal mechanisms.
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In follow-up work we found that NSF and
SNAP function to disrupt the SNARE complex using energy derived by ATP
hydrolysis, and it was later shown that SNAP and NSF are not directly
involved in bilayer fusion (1943). This focused attention on
the simplest remaining possibility, that the SNARE complex is all that
is needed to mediate fusion. However, NSF and SNAP play a critical role
in sustaining ongoing fusion. They separate v-SNAREs from t-SNAREs
after fusion (i.e., when they reside in the same bilayer),
but not during fusion (i.e., when they are paired between bilayers)
(1947). This allows NSF and SNAP to recycle SNARE complexes after fusion while sparing fusion in progress.
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The SNARE complex is extraordinarily stable, resisting heat denaturation up to 90°C (1951).
The rod-like structure of the SNARE complex with its membrane anchors
at one end, implies that it could bring two membranes into close
contact and it was suggested that the binding energy from SNARE
assembly could drive bilayer fusion (1942).
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Figure 7
v-SNAREs (in green) on a vesicle bind to their cognate
t-SNAREs (in red) on the target membrane, forming specific SNAREpins
that then fuse the two membranes. For simplicity, the t-SNARE is shown
as a single elongated rod, although it is now known to contribute three
α-helices to a four-helix v-t-SNARE
bundle. Other proteins regulate the assembly and disassembly of
SNAREpins and thus control membrane fusion.
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A direct test of the possibility that
the SNARE complex is the active principle of fusion, could only come
from assessing this function in the absence of all other proteins.
Reconstituting recombinant exocytic/neuronal SNAREs into liposomes
established that the pairing of cognate SNARES between lipid bilayers
indeed results in spontaneous membrane fusion (786) (Figure 7).
Thus, when complementary v-SNARE and t-SNARE pairs engage, a productive
fusion event is not only initiated as we had first imagined but it is
also completed.
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The SNARE hypothesis triggered extensive
research that led to the identification of many more SNAREs, which as
predicted localize and function at compartments engaging in fusion (1939).
In the most direct test of the SNARE hypothesis to date (this is being
written in 2001), it was established that specificity for membrane
fusion is encoded in the physical chemistry of the isolated SNARE
proteins (1183). At present, a total of 275 combinations of
the potential v-SNAREs and t-SNAREs encoded in the genome of yeast,
representing ER, Golgi, plasma membrane, endosomes, and vacuoles
(lysosomes), have been tested for fusion. Of these, only 9 combinations
(~3%) are fusogenic and all but one (~0.4%) correspond to known
transport pathways. Virtually without exception, fusion only takes
place with the rare combinations of v- and t-SNAREs that are drawn from
compartments connected by vesicle shuttles in the living cell. Put
differently, a physical chemist armed only with the DNA sequence of
yeast and the SNARE hypothesis could test isolated SNAREs to read out
the fusion potential and transport pathways allowed in the cell with at
least 99.6% accuracy.
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Current research focuses on the detailed
mechanisms by which the SNARE complex is regulated by additional
proteins to permit membrane fusion to be spatially and temporally
controlled, and how these mechanisms are employed in organismal
physiology and pathology. Because t-SNAREs are intrinsically
autoinhibited (1946) they can be locally activated, thereby
allowing vesicles to be targeted to a distinct region within a membrane
(such as the leading edge of plasma membrane of a moving cell) and also
adding a layer of specificity. This occurs when vesicles are initially
captured by compartment-specific protein tethers, and it appears that
vesicles must be "tethered" before they can be "SNAREd" (1892).
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The authors
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James E. Rothman is Vice Chairman of the Sloan-Kettering Institute of
Memorial Sloan-Kettering Cancer Center and founding Chairman of its
Cellular Biochemistry and Biophysics Program. Prior to his current
appointment, Rothman was the E.R. Squib Professor of Molecular Biology
at Princeton University (1988-91) and Professor of Biochemistry at
Stanford University School of Medicine (1978-88). He received his B.A.
from Yale University in physics (1971), studied medicine at Harvard
Medical School (1971-73), received his Ph.D. in biochemistry from
Harvard (1976), and was a postdoctoral fellow at MIT (1976-78). Among
other honors, Rothman has received Canada's Gairdner Foundation
International Award (1996), Saudi Arabia's King Faisal International
Prize (1996), the National Academy of Sciences' Lounsbery Award, The
Netherlands' Heineken Prize (2000), and Germany's Otto-Warburg Medal
(2001). He is a Member of the U.S. National Academy of Sciences (1993)
and its Institute of Medicine (1995). His current work centers on the
biophysical mechanism and regulation of membrane fusion, and the design
of engineered fluorescent indicator proteins for monitoring the
activity of signaling and transport pathways in cells and tissues,
including those of the nervous system. Thomas H. Söllner graduated
1987 at the Ludwig Maximilians University Munich and received his Ph.D.
in 1991 after training in the laboratory of Walter Neupert, where he
identified and analyzed the protein import machinery in the
mitochondrial outer membrane. From 1991-93, Söllner was a postdoctoral
fellow in James Rothman's laboratory at the Sloan-Kettering Institute,
New York, resulting in the SNARE hypothesis. Later, he joined the
faculty of the Cellular Biochemistry and Biophysics Program at
Sloan-Kettering where his laboratory currently studies the regulation
of membrane fusion using synaptic transmission as a model system.
James E. Rothman
Cellular Biochemistry & Biophysics Program
Sloan-Kettering Institute
1275 York Avenue, Box 521
New York, NY 10021
USA
Phone: 001 212 639 8598
Fax: 001 212 717 3604
Email: j-rothman@ski.mskcc.org
Thomas H. Söllner
Cellular Biochemistry & Biophysics Program Sloan-Kettering Institute
1275 York Avenue, Box 521
New York, NY 10021
USA
Phone: 001 212 639 5172
Fax: 001 212 717 3604
E-mail: t-sollner@ski.mskcc.org
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Last Revised on September 24, 2004
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The road taken: past and future foundations of membrane traffic.
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PubMed Journal
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(1993).
The molecular machinery for secretion is conserved from yeast to neurons.
Proc. Natl. Acad. Sci. USA 90, 2559-2563.
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Intracellular aspects of the process of protein synthesis.
Science 189, 347-358.
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782 Clary, D. O., Griff, I. C., and Rothman, J. E.
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SNAPs, a family of NSF attachment proteins involved in intracellular membrane fusion in animals and yeast.
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Purification of an N-ethylmaleimide-sensitive protein catalyzing vesicular transport.
Proc. Natl. Acad. Sci. USA 85, 7852-7856.
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Transport of vesicular stomatitis virus glycoprotein in a cell-free extract.
Proc. Natl. Acad. Sci. USA 77, 3870-3874.
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Syntaxin: a synaptic protein implicated in docking of synaptic vesicles at presynaptic active zones.
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A genomic perspective on membrane compartment organization.
Nature 409, 839-841.
PubMed Journal
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(1989).
Two vesicle-associated membrane protein genes are differentially expressed in the rat central nervous system.
J. Biol. Chem. 264, 11061-11064.
PubMed Journal
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(1994).
Synaptotagmin I: a major Ca2+ sensor for transmitter release at a central synapse.
Cell 79, 717-727.
PubMed Journal
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1942 Hanson, P. I., Roth, R., Morisaki, H., Jahn,
R., and Heuser, J. E. (1997). Structure and conformational
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Sec18p (NSF)-driven release of Sec17p (alpha-SNAP) can precede docking and fusion of yeast vacuoles.
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SNAREpins are functionally resistant to disruption by NSF and alphaSNAP.
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©Jones and Bartlett Publishers (2007)
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